PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10022463
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 281aa    MW: 30817.7 Da    PI: 6.7867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10022463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.1e-4371071101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++Cv+apyfp eqp+kfa vh++FGasnv kll+++p  +reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+ql+ +l+++k
  Lus10022463   7 PCAACKFLRRKCTQECVFAPYFPPEQPAKFASVHRVFGASNVAKLLNEIPAGQREDAVNSLAYEADARLRDPVYGCVGLISILQHKLKQLHIDLDTAK 104
                  7**********************************************************************************************999 PP

       DUF260  99 eel 101
                  +el
  Lus10022463 105 QEL 107
                  975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.7766107IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSQNSPCAA CKFLRRKCTQ ECVFAPYFPP EQPAKFASVH RVFGASNVAK LLNEIPAGQR  60
EDAVNSLAYE ADARLRDPVY GCVGLISILQ HKLKQLHIDL DTAKQELSKY IGPQAMLPNL  120
GSSPYIAAGM NMMMMPNHHH QLHHQNMMLP MMGIPTDHNN NNNTNEQQLH HQQIYAVAAE  180
SVPQQQQQQQ QQFEQEGIRI IDGGGGGEAE TGRTVGMNLN QIRSPISAAS LALGTSSDNR  240
AYQVEMKPVV YHVQPQNLEG RSSGCSTGDD EGRSIDRASN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079180.12e-74PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ34e-71LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A067KA722e-74A0A067KA72_JATCU; Uncharacterized protein
STRINGPOPTR_0007s11460.14e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-67ASYMMETRIC LEAVES 2-like 1